PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G24300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 308aa    MW: 32166.6 Da    PI: 10.5914
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G24300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.8e-31222279359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+++dp ++++tYegeH+h+
  OGLUM04G24300.1 222 DEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERATDDPAMLVVTYEGEHRHT 279
                      9************************9888****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.3E-19176218IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.0E-32208279IPR003657WRKY domain
PROSITE profilePS5081130.446215281IPR003657WRKY domain
SuperFamilySSF1182903.66E-26218279IPR003657WRKY domain
SMARTSM007741.1E-36220280IPR003657WRKY domain
PfamPF031061.6E-26222278IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAVDLMGCYA PRRADDQLAI QEAATAGLRS LEMLVSSLSS SSQAAGAHKA SPQQQPFGEI  60
ADQAVSKFRK VISILDRTGH ARFRRGPVES SAPAAPVAAA PPPPPPPAPV AAALAPTSSQ  120
PQTLTLDFTK PNLTMSAATS VTSTSFFSSV TAGEGSVSKG RSLLSSGKPP LSGHKRKPCA  180
GGHSEATANG GRCHCSKRRK NRVKRTIRVP AISSKIADIP PDEYSWRKYG QKPIKGSPYP  240
RGYYKCSTVR GCPARKHVER ATDDPAMLVV TYEGEHRHTP GPLPAPPAAA AVAAIPVSVA  300
VSTGNGHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-22208278271WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0612660.0AK061266.1 Oryza sativa Japonica Group cDNA clone:006-212-C10, full insert sequence.
GenBankAK0729380.0AK072938.1 Oryza sativa Japonica Group cDNA clone:J023149N23, full insert sequence.
GenBankCT8320680.0CT832068.2 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103N04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633632.11e-167PREDICTED: probable WRKY transcription factor 11
SwissprotQ9SV151e-99WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLA0A0D9ZQA10.0A0A0D9ZQA1_9ORYZ; Uncharacterized protein
STRINGBGIOSGA017063-PA1e-166(Oryza sativa Indica Group)
STRINGLOC_Os04g51560.11e-166(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.11e-78WRKY DNA-binding protein 11